CIDeR
CIDeR
The new release of the CIDeR database is now (01.02.2023) available.
News: We contributed to the COVID-19 Disease Map project (https://fairdomhub.org/projects/190). See also our Selected topics.
About CIDeR
CIDeR is a manually curated database of interactions between disease-related elements such as biomolecules (proteins, metabolites etc.) and other factors (biological processes, phenotypes etc.). The aim of CIDeR is to serve as knowledge base for experimentally-oriented scientists and as resource for bioinformatics applications. The focus of our work is on metabolic diseases, neurodegenerative diseases, cardiovascular diseases, mental diseases and rare diseases. Sister databases are HSC-Explorer (http://mips.helmholtz-muenchen.de/HSC/) (Hematopoiesis) and HoPaCI (http://mips.helmholtz-muenchen.de/HoPaCI/) (host-pathogen interactions). The CIDeR dataset is available for download.
General Statistics
| Number and list of articles: | 13804 |
| 139072 | |
| 15144 |
Interaction Statistics
| Proteins/Genes | Bioprocesses | |||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Selected Topics:
- 1. COVID-19: renin-angiotensin system
- 2. COVID-19: blood coagulation
- 3. Metformin: molecular mechanisms
- 4. Alzheimer and Stress
- 5. Sleep duration pathways
- 6. Restrictive cardiomyopathy gene variants network
- 7. Selenoproteins and their function in the brain
- Alzheimer and AMPK
- Alzheimer and Leptin
- Alzheimer and Linoleic acid
- Alzheimer and Lithium
- Cardiomyopathy, familial restrictive
- DePick: AR-NcoR Binding Assay
- DePick: E-Cadherin Synthetic Lethal Assay
- DePick: GSI Synthetic Lethal Assay
- DePick: Glioblastoma Modulators Assay
- DePick: PGC1-alpha Expression (PSM) Assay
- DePick: PGC1-alpha Expression (Pre-adipocytes) Assay
- DePick: SR-BI Lipid Transfer Assay
- DePick: Wnt Inhibitors Assay
- Defects in amino acid metabolism - Phenylketonuria
- Defects in amino acid metabolism - the urea cycle and its disorders
- Defects in the intracellular vitamin B12 uptake - Methylmalonic aciduria
- Epilepsy (pilocarpine model)
- Factors and processes influencing idiopathic pulmonary fibrosis (IPF)
- Inflammatory bowel disease: NOD2 signalosome
- Lithium and its molecular targets
- Pancreatic and cerebellar agenesis
- Warburg effect
Help
- How to query cider?
Per default the search space includes all diseases and all types of data. Queries ... - Visualization of data in cider
Results of a query are initially shown as a list. On top of the ... - Origin of the data in cider
Data in CIDeR are retrieved mostly from research articles and also from reviews. All ... - Curation of data in cider
Information about disease-related interactions consists of three kinds of information. The central information is ...
Genome Biology about CIDeR