HoPaCI-db The Host-Pathogen and Coxiella Interaction database

About HoPaCI-DB
HoPaCI-DB (Host-Pathogen Interaction database) is a manually curated database of interactions between host-pathogen-related elements such as biomolecules (proteins, metabolites etc.) and other factors (biological processes, cellular components etc.). HoPaCI-DB is an analysis resource for the study of the pathogens Pseudomonas aeruginosa and Coxiella species. The majority of host species refers to mammalia, but also results from experiments with C. elegans, Drosophila melanogaster or Danio rerio are included. The aim of HoPaCI-DB is to serve as knowledge base for experimentally- oriented scientists and as resource for bioinformatics applications.
General Statistics
Number and list of articles: | 290 |
4443 | |
371 |
Interaction Statistics
Proteins/Genes | Bioprocesses | |||||||||||||||||||||
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Selected Topics:
- Coxiella burnetii
- Biogenesis of Coxiella containing vacuole, CCV
- Biphasic developmental cycle
- Host cell apoptosis/autophagy
- Host cell cholesterol
- Host cell signaling
- Lipopolysaccharide, LPS I/LPS II
- Q fever, acute
- Q fever, chronic
- T4BSS protein secretion system/complex Pseudomonas aeruginosa
- Acyl-HSL quorum sensing
- PQS quorum sensing
- Pyocyanine
- RetS/LadS/Gac/Rsm signaling
- T1SS protein secretion system/complex
- T2SS protein secretion system/complex
- T3SS protein secretion system/complex
- T5SS protein secretion system/complex
- T6SS protein secretion system/complex
- TCS (two-component signal transduction system)
- TCS-HptB signaling
- c-di-GMP signaling
- cAMP/Vfr signaling
- extracellular polysaccharide
- flagellum
- iron uptake/metabolism
- type IV pilus
Help
- How to query HoPaCI?
Per default the search space includes all types of data concerning pathogen-host relations. One ... - Visualization of data in HoPaCI
Pop-up windows show the information that is basis of the interactions - Hovering over ... - Origin of the data in HoPaCI
Data in HoPaCI are retrieved from research articles and also from reviews. All interactions are ... - Curation of data in HoPaCI
Information about pathogen-related interactions consists of three kinds of information. The central information is ...